Warning: There is maintenance being done
Please cite these papers when you publish results created on the ClusPro server.
Please also cite the following papers if you used specific modes.
For Peptide mode:
Porter KA, Xia B, Beglov D, Bohnuud T, Alam N, Schueler-Furman O, Kozakov D.ClusPro PeptiDock: efficient global docking of peptide recognition motifs using FFT. Bioinformatics. 2017 Oct; 33(20):3299-3301. pdfFor Dimer Classification mode:
Yueh C, Hall DR, Xia B, Padhorny D, Kozakov D, Vajda S. ClusPro-DC: Dimer Classification by the Cluspro Server for Protein–Protein Docking. Journal of Molecular Biology. 2017 Feb; 429(3):372-381. pdfFor Antibody mode:
Brenke R, Hall DR, Chuang G-Y, Comeau SR, Bohnuud T, Beglov D, Schueler-Furman O, Vajda S, Kozakov D. Application of asymmetric statistical potentials to antibody-protein docking. Bioinformatics. 2012 Oct; 28(20):2608-2614; pdfFor Restraints mode:
Xia B, Vajda S, Kozakov D. Accounting for pairwise distance restraints in FFT-based protein–protein docking. Bioinformatics. 2016 Nov; 32(21): 3342-3344. pdfFor SAXS mode:
Ignatov M, Kazennov A, Kozakov D. ClusPro FMFT-SAXS: Ultra-fast Filtering Using Small-Angle X-ray Scattering Data in Protein Docking. Journal of Molecular Biology. 2018 Jul; 430(15):2249-2255. linkFor Epitope Mapping mode:
Desta IT, Kotelnikov S, Jones G, Beglov D, Vajda S, Kozakov D. ClusPro Antibody-Based Epitope Mapping - a structural epitope mapping web server.In submission.